This project is a repository that compares long-reads metagenomic assemblers and analyzes metagenomic data. It includes scripts to check the quality of the reads, fetch the sequencer used, assemble metagenomes using different tools, polish the assemblies, calculate the coverage, and check the quality of the assemblies. The pipeline is defined using Snakemake and can be run on a cluster with slurm and conda support.

Projet metagenomics est un ensemble d'outils permettant le téléchargement et le nettoyage de données génomiques à partir de GenBank pour une analyse ultérieure. Il dépend de Python, BioPython et taxonkit.